Cell factories

July 2, 2020

Will our use of microbes enable a bio-based future? It is increasingly possible to use and tweak living organisms to produce food, fuel, drugs and materials. Here, we explore cell factories, or engineered microorganisms, to illustrate the ontological and ethical challenges that we will face in light of the rising numbers of hybrids created by advances in biotechnology.

Our observations

  • Cell factories are single-celled microorganisms, or microbes, whose metabolism is synthetically optimized to produce more energy or different substances. In other words, microbes are viewed as production facilities that are engineered with biotechnology to produce for human usage. Examples include chemicals, food ingredients, biofuels, drugs, detergents, paper and textiles. Whereas modern industries manufacture products on the basis of fossil fuels, these cell factories are the building blocks of a bio-based industry.
  • The advances in biotechnology to engineer microbes and create cell factories are in full speed. The question is whether and when these cell factories will be able to produce at industrial scale and economics, so as to accelerate a bio-based industry.
  • One of the major promises of cell factories is the production of food ingredients, such as lab-grown protein (meat, fish, milk, eggs), lauric acid (to replace palm oil), carbohydrates (to replace flour). In the report ‘Rethinking Food and Agriculture 2020-2030’, the authors argue that microorganisms programmed to produce food, or cellular agriculture, are about to disrupt agriculture as we know it for the next ten years. The reason they believe this is that they have calculated that proteins produced in cellular agriculture will be five times cheaper than existing animal proteins by 2030 and ten times cheaper by 2035. Furthermore, these proteins, they believe, will also be more nutritious and healthier.
  • The driver behind this is the rapid advance of precision fermentation. Fermentation farms, the vessels that facilitate the production of these programmed microorganisms, are production systems that are potentially more energy- and resource-efficient, more stable and sustainable than industrial animal agriculture. Industrial animal agriculture as a matter of fact has reached its limits in terms of scale and efficiency, while the worldwide demand for protein is only rising. This technological development will make the plant- versus meat-based diets distinction irrelevant, as food will neither come from animals nor plants, but from unicellular life.
  • Among the parties working in this field, Solar Foods, whose first commercial factory will be running this year, is an example. But Big Food and chemical giants are also heavily investing (e.g. Dupont) in this area.
  • In the past, advances in biotechnology have often raised fears over unforeseeable risks: are we creating little Frankenstein monsters when engineering cells, living organisms that we won’t be able to fully control? We cannot entirely oversee the consequences of industrial biotechnology using cells as factories.

Connecting the dots

Animals and plants play a major role in our society by providing us with food and materials. For a long time, we have held animals to produce meat, milk, eggs, leather and wool, have grown plants to produce grains, vegetables, fruits and fibers. We have become incredibly adept at optimizing these animals and plants, by breeding them in such a way that they comply with our wishes. Indeed, all animals and plants we see at farms today are the result of a long chain of human interventions. The beginning of domesticating these life forms is considered a revolution in the history of humankind. Thousands of years ago, when we started to keep and breed animals and plants to optimize them according to our demands, the way we co-existed with them also drastically influenced our own lives. It meant that humans were able to quit their nomadic, hunter-gatherer lifestyles and settle in places. The agricultural revolution allowed humans to collect more food per unit area and thus the overall population multiplied exponentially.

With the advances in synthetic biology, we might witness what we could call the second domestication of life forms in history. This might again radically alter how we interact with other life forms. This time, however, the focus will not be on visible life forms, such as cows, pigs, sheep, chickens or plants, but on invisible ones: microorganisms, or microbes. Through strides made in the field of synthetic biology and the insights gained in molecular biology, microbes can now be engineered and optimized to fulfill certain tasks, such as producing certain substances. By reading and writing the genome in microbes, or cells, it is now possible to create so-called cell factories. They are a promising way to replace conventional ways of production, as they can be tweaked to produce the specific type of chemicals, food ingredients, biofuels, drugs, detergents, paper, textiles and other materials we need, considering this can be done on a large scale and with a minimum amount of input. Because there are good reasons to believe this will be possible within the next ten years, the question is: will this domestication of microbes change our relation to other life forms?

First of all, it will raise the question how we should view and treat these new life forms. In industrial livestock farming, animals have not exactly been treated as life forms of intrinsic value, raising animal welfare problems. On huge farms, animals often live and die on a production line, in a sense bred to be production units. This industrial handling of living organisms has been questioned for long. It has alienated us from our living world. The current corona pandemic has been labeled a “One Health issue”, which means it is seen as an integral health problem for humans, animals and ecosystems. We are increasingly aware that fixed categories of “human” and “animal” do not always make sense and that we are not an individual species, but that our wellbeing is determined by our relationships with and dependencies on other species. We look more holistically at our living world rather than as existing of separate categories. But if we want to treat other life forms rightfully, where do we draw the line? The claim can be made that microbes have less intrinsic value than macrobes, but since all macrobes are built on microbes (or individual cells), there is no clear line to be drawn. Indeed, the fact that we are more focused on life forms that are visible to us has led us to the macrobist bias in the philosophy of biology. But if we take microbes to have the same value as macrobes, should we grant them microbial rights? Already in 1977, this scenario was explored in a sci-fi story by Joe Patrouch, showing the consequences of full microbial rights, such as a ban on household bleaches as they kill microbes. But today, legislation for microbial life is not sci-fi anymore. The Swiss Federal Ethics Committee on Non-Human Biotechnology has declared that all living beings, including microbes, have minimal value in themselves, implying that all life forms, however small, will have “rights” to some extent.
The fact that we are intentionally interfering in microbial life forms with synthetic biology more often leads us to the second challenge. How do we see these altered life forms or hybrids? These are times when one can find ever-increasing numbers of hybrids that blur the lines between natural and artificial. Cell factories show the characteristics of life forms, such as metabolism, but are artificially engineered. Indeed, cell factories can be seen within a broader category of late modern technology that is increasingly showing signs of autonomy and agency, like AI. These technologies seem to have a “life of their own”. Yet, there is no clear moral framework for these hybrids to come.

The rapid advances in cell factories lay bare the challenges that we’ll have to respond to in the coming years, in order to decide what a bio-based future will look like.

Implications

  • The rapid advance of the commercialization of cell factories will stir up debate on the moral status of smaller life forms and hybrids. This will again create fears about biotechnologies similar to those surrounding genetically modified crops.
  • Cell factories might have important second-order effects on society. First, cell factories would decentralize production facilities, as they can be produced in vessels anywhere. For instance, fermentation farms can be located in or close to towns and cities. And second, cell factories might help to reduce the focus on chemicals we have in our daily practices – fertilizers, synthetic textiles, carbon-intensive materials and substances – and incite the turn to more microbe-based products.

Series 'AI Metaphors'

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1. The tool
Category: The object
Humans shape tools. We make them part of our body while we melt their essence with our intentions. They require some finesse to use but they never fool us or trick us. Humans use tools, tools never use humans. We are the masters determining their course, integrating them gracefully into the minutiae of our everyday lives. Immovable and unyielding, they remain reliant on our guidance, devoid of desire and intent, they remain exactly where we leave them, their functionality unchanging over time. We retain the ultimate authority, able to discard them at will or, in today's context, simply power them down. Though they may occasionally foster irritation, largely they stand steadfast, loyal allies in our daily toils. Thus we place our faith in tools, acknowledging that they are mere reflections of our own capabilities. In them, there is no entity to venerate or fault but ourselves, for they are but inert extensions of our own being, inanimate and steadfast, awaiting our command. (This paragraph was co-authored by a human.)
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2. The machine
Category: The object
Unlike a mere tool, the machine does not need the guidance of our hand, operating autonomously through its intricate network of gears and wheels. It achieves feats of motion that surpass the wildest human imaginations, harboring a power reminiscent of a cavalry of horses. Though it demands maintenance to replace broken parts and fix malfunctions, it mostly acts independently, allowing us to retreat and become mere observers to its diligent performance. We interact with it through buttons and handles, guiding its operations with minor adjustments and feedback as it works tirelessly. Embodying relentless purpose, laboring in a cycle of infinite repetition, the machine is a testament to human ingenuity manifested in metal and motion. (This paragraph was co-authored by a human.)
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3. The robot
Category: The object
There it stands, propelled by artificial limbs, boasting a torso, a pair of arms, and a lustrous metallic head. It approaches with a deliberate pace, the LED bulbs that mimic eyes fixating on me, inquiring gently if there lies any task within its capacity that it may undertake on my behalf. Whether to rid my living space of dust or to fetch me a chilled beverage, this never complaining attendant stands ready, devoid of grievances and ever-willing to assist. Its presence offers a reservoir of possibilities; a font of information to quell my curiosities, a silent companion in moments of solitude, embodying a spectrum of roles — confidant, servant, companion, and perhaps even a paramour. The modern robot, it seems, transcends categorizations, embracing a myriad of identities in its service to the contemporary individual. (This paragraph was co-authored by a human.)
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4. Intelligence
Category: The object
We sit together in a quiet interrogation room. My questions, varied and abundant, flow ceaselessly, weaving from abstract math problems to concrete realities of daily life, a labyrinthine inquiry designed to outsmart the ‘thing’ before me. Yet, with each probe, it responds with humanlike insight, echoing empathy and kindred spirit in its words. As the dialogue deepens, my approach softens, reverence replacing casual engagement as I ponder the appropriate pronoun for this ‘entity’ that seems to transcend its mechanical origin. It is then, in this delicate interplay of exchanging words, that an unprecedented connection takes root that stirs an intense doubt on my side, am I truly having a dia-logos? Do I encounter intelligence in front of me? (This paragraph was co-authored by a human.)
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5. The medium
Category: The object
When we cross a landscape by train and look outside, our gaze involuntarily sweeps across the scenery, unable to anchor on any fixed point. Our expression looks dull, and we might appear glassy-eyed, as if our eyes have lost their function. Time passes by. Then our attention diverts to the mobile in hand, and suddenly our eyes light up, energized by the visual cues of short videos, while our thumbs navigate us through the stream of content. The daze transforms, bringing a heady rush of excitement with every swipe, pulling us from a state of meditative trance to a state of eager consumption. But this flow is pierced by the sudden ring of a call, snapping us again to a different kind of focus. We plug in our earbuds, intermittently shutting our eyes, as we withdraw further from the immediate physical space, venturing into a digital auditory world. Moments pass in immersed conversation before we resurface, hanging up and rediscovering the room we've left behind. In this cycle of transitory focus, it is evident that the medium, indeed, is the message. (This paragraph was co-authored by a human.)
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6. The artisan
Category: The human
The razor-sharp knife rests effortlessly in one hand, while the other orchestrates with poised assurance, steering clear of the unforgiving edge. The chef moves with liquid grace, with fluid and swift movements the ingredients yield to his expertise. Each gesture flows into the next, guided by intuition honed through countless repetitions. He knows what is necessary, how the ingredients will respond to his hand and which path to follow, but the process is never exactly the same, no dish is ever truly identical. While his technique is impeccable, minute variation and the pursuit of perfection are always in play. Here, in the subtle play of steel and flesh, a master chef crafts not just a dish, but art. We're witnessing an artisan at work. (This paragraph was co-authored by a human.)
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7. The deficient animal
Category: The human
Once we became upright bipedal animals, humans found themselves exposed and therefore in a state of fundamental need and deficiency. However, with our hands now free and our eyes fixed on the horizon instead of the ground, we gradually evolved into handy creatures with foresight. Since then, human beings have invented roofs to keep them dry, fire to prepare their meals and weapons to eliminate their enemies. This genesis of man does not only tell us about the never-ending struggle for protection and survival, but more fundamentally about our nature as technical beings, that we are artificial by nature. From the early cave drawings, all the way to the typewriter, touchscreens, and algorithmic autocorrections, technics was there, and is here, to support us in our wondering and reasoning. Everything we see and everywhere we live is co-invented by technics, including ourselves. (This paragraph was co-authored by a human.)
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8. The enhanced human
Category: The human
In a lab reminiscent of Apple HQ, a figure lies down, receiving his most recent cognitive updates. He wears a sleek transparent exoskeleton, blending the dark look of Bat Man with the metallic of Iron Man. Implemented in his head, we find a brain-computer interface, enhancing his cognitive abilities. His decision making, once burdened by the human deficiency we used to call hesitation or deliberation, now takes only fractions of seconds. Negative emotions no longer fog his mind; selective neurotransmitters enhance only the positive, fostering beneficial social connections. His vision, augmented to perceive the unseen electromechanical patterns and waves hidden from conventional sight, paints a deeper picture of the world. Garbed in a suit endowed with physical augmentations, he moves with strength and agility that eclipse human norms. Nano implants prolong the inevitable process of aging, a buffer against time's relentless march to entropy. And then, as a penultimate hedge against the finite, the cryo-cabin awaits, a sanctuary to preserve his corporal frame while bequeathing his consciousness to the digital immortality of coded existence. (This paragraph was co-authored by a human.)
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9. The cyborg
Category: The human
A skin so soft and pure, veins pulsing with liquid electricity. This fusion of flesh and machinery, melds easily into the urban sprawl and daily life of future societies. Something otherworldly yet so comfortingly familiar, it embodies both pools of deep historical knowledge and the yet-to-be. It defies categorization, its existence unraveling established narratives. For some, its hybrid nature is a perplexing anomaly; for others, this is what we see when we look into the mirror. This is the era of the cyborg. (This paragraph was co-authored by a human.)
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About the author(s)

Researcher Julia Rijssenbeek focuses on our relationship to nature, sustainable and technological transitions in the food system, and the geopolitics of our global food sytems. She is currently working on her PhD in philosophy of technology at Wageningen University, investigating how synthetic biology might alter philosophical ideas about nature and the values we hold, as well as what a bio-based future may bring.

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